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New rare cause of inherited retinal dystrophy is discovered 

3 min read

Themes:

A new study published in the American Journal of Human Genetics has discovered a genetic cause of an eye condition called X-linked inherited retinal dystrophy.   The study was led by Dr. Jessica Gardner and our BRC Co-lead for the Genomic Discovery and Therapeutics theme Professor Alison Hardcastle who are both researchers at UCL Institute of Ophthalmology. 
This graphical abstract provides a visual overview of research related to retinal dystrophy genetics, disease models, and transcript changes in retinal organoids.

Top Section (Genetics):

Depicts the Xq27.1 palindrome structure with LINE-1 and LTR elements.
Shows two retinal dystrophy families linked to genomic alterations:
Family 1: A 58 kb region on chromosome 9 (chr9p24.3) near CBWD1/ZNG1A genes.
Family 2: A 169 kb region on chromosome 3 (chr3p14) involving SYNPR, SYNPR-AS1, and SNTN genes.
Illustrates the impact of these alterations on photoreceptor degeneration.
Middle Section (Models):

Represents different experimental models used for the study: fibroblasts, induced pluripotent stem cells (iPSCs), iPSC-derived retinal pigment epithelial (iPSC-RPE) cells, and retinal organoids.
Bottom Section (Retinal Organoid Transcript Changes):

Shows looping structures representing topologically associating domains (TADs) in the SOX3 and retinal dystrophy regions.
Highlights the upregulation of LINC00632 and the downregulation of CDR1as/ciRS-7, depicting a transcript imbalance in retinal organoids.
Graphical abstract of findings in the study

X-linked inherited retinal dystrophy is a rare genetic eye condition that mostly affects males because it’s linked to the X chromosome. It causes problems with the retina, the part of the eye that detects light, leading to vision loss. The severity and age when it begins can vary, but it usually starts in childhood or young adulthood.  This novel genetic discovery has been observed in 3 generations of the families involved in the study. 

The team used genetic information from two different families where traditional genetic tests were unable to find the cause of their condition. They utilised stem cell technology methods to produce pluripotent stem cells which they pushed towards growing into Retinal Organoids (ROs) which are are three-dimensional structures that closely mimic the human retina. The ROs provide a working model of the affected area for the researchers to study in the laboratory. 

Image shows Dr Jessica Gardener in her lab
Dr Gardner said of her work on the study
“I am very proud to have been involved with this interesting and exciting research. I love a scientific challenge and felt determined to find the cause of visual loss in these families who had remained without a genetic diagnosis for so many years. I hope the rare genetic mechanism I have discovered will help other research centres, world-wide, to look for similar genetic events in families with vision loss and other rare genetic conditions.”

The families in the study have remained genetically unresolved for decades but with new cutting-edge genetic techniques including Next Generation Sequencing, CUT&Tag and Hi-C , working with the ROs allowed our researchers to observe a new and very unusual genetic cause of disease.  

The researchers didn’t find a change in a gene, but instead they found pieces of other chromosomes had jumped into the X-chromosome. These jumping parts are named insertions or structural variants. With the ROs, they could then look at these insertions and they discovered that they dysregulated a non-coding gene on the X chromosome. The dysregulation created by the structural variants interfered with how the gene is controlled in the retina.   

The discovery will lead to further research in this area in addition to a better and earlier diagnosis rate for the condition.  

Out BRC is committed to supporting studies for rare diseases as this work is crucial for advancing medical knowledge, improving patient care, and driving innovation in treatment development.  

Research in rare diseases not only helps uncover the genetic and molecular mechanisms behind certain conditions but also provides valuable insights into more common diseases, as many rare disorders share biological pathways with widespread illnesses. Additionally, studying rare diseases encourages the development of novel therapies, such as gene and precision medicine, which can have broader applications. Increased awareness, funding, and research efforts are essential to ensure that individuals affected by rare diseases receive accurate diagnoses, effective treatments, and improved quality of life.